xcube-cmems

A xcube plugin that that allows generating data cubes from the CMEMS API.

Setup

Configuring access to the CMEMS API

In order to access the CMEMS API via the xcube-cmems plugin, you need to create a cmems account first, if you not do already have one.

Installing the xcube-cmems plugin

This section describes three alternative methods you can use to install the xcube-cmems plugin.

conda can sometimes be inconveniently slow when resolving an environment. If this causes problems, consider using mamba as a much faster drop-in alternative to conda.

Installation into a new environment with conda

xcube-cmems and all necessary dependencies (including xcube itself) are available on conda-forge, and can be installed using the conda package manager. The conda package manager itself can be obtained in the miniconda distribution. Once conda is installed, xcube-cmems can be installed like this:

$ conda create --name xcube-cmems-environment --channel conda-forge xcube-cmems
$ conda activate xcube-cmems-environment

The name of the environment may be freely chosen.

Installation into an existing environment with conda

This method assumes that you have an existing conda environment, and you want to install xcube-cmems into it.

xcube-cmems can also be installed into an existing conda environment. With the existing environment activated, execute this command:

$ conda install --channel conda-forge xcube-cmems

Once again, xcube and any other necessary dependencies will be installed automatically if they are not already installed.

Installation into an existing environment from the repository

If you want to install xcube-cmems directly from the git repository (for example if order to use an unreleased version or to modify the code), you can do so as follows:

$ conda create --name xcube-cmems-environment --channel conda-forge --only-deps xcube-cmems
$ conda activate xcube-cmems-environment
$ git clone https://github.com/dcs4cop/xcube-cmems.git
$ python -m pip install --no-deps --editable xcube-cmems/

This installs all the dependencies of xcube-cmems into a fresh conda environment, then installs xcube-cmems into this environment from the repository.

Testing

You can run the unit tests for xcube-cmems by executing

$ pytest

in the xcube-cmems repository. Note that, in order to successfully run the tests using the current repository version of xcube-cmems, you may also need to have the cmems credentials set as environment variables COPERNICUSMARINE_SERVICE_USERNAME and COPERNICUSMARINE_SERVICE_PASSWORD.

To create a test coverage report, you can use

pytest --cov xcube_cmems --cov-report html

This will write a coverage report to htmlcov/index.html.

Use

Jupyter notebooks demonstrating the use of the xcube-cmems plugin can be found in the examples/notebooks/ subdirectory of the repository.

Releasing

To release xcube-cmems, please follow the steps outlined in the xcube Developer Guide.