A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Multi-source Translation

A collection of awesome things regarding all omics.

Development repository for the Bioconductor package 'mixOmics '

Visual self-service analytics platform for big omics data.

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

From geospatial to spatial -omics

Healthcare and biomedical datasets, for AI/ML

Picotti lab data analysis package.

Prize-Collecting Steiner Forests for Interactomes

compositional data analysis toolbox

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

Open-Source Software for Omic Data Analysis and Visualization

Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

An R package to plot interactive three-way differential expression analysis

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

R package for High dimensional data analysis and integration with O2PLS!

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.