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close #3268

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codecov bot commented Nov 12, 2025

Codecov Report

❌ Patch coverage is 0.26316% with 379 lines in your changes missing coverage. Please review.
✅ Project coverage is 73.42%. Comparing base (370c642) to head (c4c7482).

Files with missing lines Patch % Lines
src/scvi/module/_mlxvae.py 0.00% 146 Missing ⚠️
src/scvi/train/_trainingplans.py 1.06% 93 Missing ⚠️
src/scvi/model/base/_mlxmixin.py 0.00% 68 Missing ⚠️
src/scvi/model/_mlxscvi.py 0.00% 53 Missing ⚠️
src/scvi/model/__init__.py 0.00% 5 Missing ⚠️
src/scvi/model/base/__init__.py 0.00% 5 Missing ⚠️
src/scvi/module/__init__.py 0.00% 5 Missing ⚠️
src/scvi/train/__init__.py 0.00% 4 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3598      +/-   ##
==========================================
- Coverage   74.70%   73.42%   -1.28%     
==========================================
  Files         225      228       +3     
  Lines       21631    22011     +380     
==========================================
+ Hits        16159    16162       +3     
- Misses       5472     5849     +377     
Files with missing lines Coverage Δ
src/scvi/train/__init__.py 76.19% <0.00%> (-17.93%) ⬇️
src/scvi/model/__init__.py 77.77% <0.00%> (-17.68%) ⬇️
src/scvi/model/base/__init__.py 75.00% <0.00%> (-19.74%) ⬇️
src/scvi/module/__init__.py 76.92% <0.00%> (-18.32%) ⬇️
src/scvi/model/_mlxscvi.py 0.00% <0.00%> (ø)
src/scvi/model/base/_mlxmixin.py 0.00% <0.00%> (ø)
src/scvi/train/_trainingplans.py 73.56% <1.06%> (-11.33%) ⬇️
src/scvi/module/_mlxvae.py 0.00% <0.00%> (ø)

... and 1 file with indirect coverage changes

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@ori-kron-wis
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umaps (based on api_overview data):
image

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Error when trying to feature native MLX accelerated scvi

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