Model: DiagVI (new) #3575
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Model: DiagVI (new) #3575
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Update feature branch to match upstream/main
…pdates Re-enable some workflows
…test-linux Chore/ci disable schedule test linux
…com/quadbio/scvi-tools into 2-basic-batch-encoding-like-in-glue
…-in-glue 2 basic batch encoding like in glue
…rs-with-guidance-graph-merge
…nce-graph-merge merge to fix divergent branches
Update test_linux_custom_dataloader.yml
29 totalvi decoder we also implemented the GLUE decoder (outperformed totalvi)
# Conflicts: # pyproject.toml # src/scvi/external/__init__.py
for more information, see https://pre-commit.ci
canergen
reviewed
Oct 27, 2025
| # for custom dataloders | ||
| dataloaders = ["lamindb>=1.12.1", "cellxgene-census", "tiledbsoma", "tiledbsoma_ml", "torchdata"] | ||
| # for diagvi | ||
| diagvi = ["torch_geometric", "geomloss"] |
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Do you need geomloss? It doesn't seem to be actively maintained.
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Hi Can, at the moment we rely on geomloss to compute the unbalanced optimal transport loss component. However, we are working on another approach based on POT, which is more actively maintained.
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Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #3575 +/- ##
==========================================
- Coverage 75.22% 74.65% -0.58%
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Files 225 231 +6
Lines 21637 22444 +807
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+ Hits 16277 16756 +479
- Misses 5360 5688 +328
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