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    110 repositories

    • mriqc-nidm_bidsapp

      Public
      A BIDS App that runs MRIQC quality control on neuroimaging data and converts the outputs to NIDM (Neuroimaging Data Model) format for improved interoperability and integration with existing analysis provenance graphs.
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • containers

      Public
      Containers "distribution" for reproducible neuroimaging
      Roff
      •
      Apache License 2.0
      •16•30•39•5•Updated Jan 5, 2026Jan 5, 2026

    • hbcd-loris2reproschema

      Public
      HBCD LORIS format to ReproSchema format
      Python
      •
      MIT License
      •1•0•0•23•Updated Jan 5, 2026Jan 5, 2026

    • simple2_bidsapp_babs

      Public
      test freesurfer_bidsapp with babs
      Shell
      •
      MIT License
      •1•0•1•0•Updated Jan 4, 2026Jan 4, 2026

    • reprostim

      Public
      Automated capture of audio-visual stimuli into BIDS datasets
      reproducible-researchpsychologyneuroimaging
      Python
      •4•6•45•1•Updated Jan 4, 2026Jan 4, 2026

    • ants-nidm_bidsapp

      Public
      A BIDS App for ANTs-based brain segmentation with NIDM outputs.
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 3, 2026Jan 3, 2026

    • freesurfer-nidm_bidsapp

      Public
      A BIDS App implementation for FreeSurfer that provides standardized surface reconstruction and morphometric analysis with NIDM output.
      Python
      •
      MIT License
      •3•0•1•0•Updated Jan 3, 2026Jan 3, 2026

    • reproschema

      Public
      A standardized form generation and data collection schema to harmonize results by design across projects.
      schemainteroperabilitystandardizing-assessmentsclinical-assessments
      Python
      •
      Other
      •24•18•16•8•Updated Jan 1, 2026Jan 1, 2026

    • neurodocker

      Public
      Generate custom Docker and Singularity images, and minimize existing containers
      linuxdockersciencedockerfilereproducible-researchcontainersneurosciencesingularity-containernipypeapptainer
      Python
      •
      Apache License 2.0
      •96•353•7•9•Updated Jan 1, 2026Jan 1, 2026

    • repronim.org

      Public
      WiP for a replacement website
      HTML
      •
      MIT License
      •9•0•23•6•Updated Dec 17, 2025Dec 17, 2025

    • reproschema-py

      Public
      Python
      •
      Apache License 2.0
      •10•2•15•4•Updated Dec 8, 2025Dec 8, 2025

    • ants_seg_to_nidm

      Public
      ANTS-based structural segmentation exporter to NIDM
      Python
      •
      MIT License
      •3•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • segstats_jsonld

      Public
      Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
      brainweb
      Python
      •
      MIT License
      •8•1•9•2•Updated Nov 30, 2025Nov 30, 2025

    • stuff2NIDM

      Public
      Repo for the process of adding "stuff" (ie the results of fmriprep, etc. processing) to the NIDM graph.
      Python
      •
      MIT License
      •2•1•1•1•Updated Nov 18, 2025Nov 18, 2025

    • ReproInventory

      Public
      A repo for developing the ReproNim inventory of training resources.
      TypeScript
      •
      MIT License
      •6•5•5•0•Updated Oct 2, 2025Oct 2, 2025

    • reproman

      Public
      ReproMan (AKA NICEMAN, AKA ReproNim TRD3)
      Python
      •
      Other
      •14•24•158•6•Updated Sep 26, 2025Sep 26, 2025

    • reproschema-protocol-cookiecutter

      Public
      A cookiecutter for reproschema protocols.
      Python
      •1•0•1•1•Updated Sep 20, 2025Sep 20, 2025

    • FAIR_neuroimaging_with_NIDM

      Public
      FAIR neuroimaging with the Neuroimaging Data Model and PyNIDM
      Shell
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • reproschema-ui

      Public
      UI to render ReproSchema based protocols and assessments.
      hacktoberfestjsonldform-ui
      Vue
      •
      Other
      •20•3•46•3•Updated Aug 25, 2025Aug 25, 2025

    • simple2_NIDM_examples

      Public
      ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad
      Shell
      •15•3•2•3•Updated Aug 14, 2025Aug 14, 2025

    • repronim.github.io

      Public
      HTML
      •
      GNU General Public License v3.0
      •11•3•24•0•Updated Aug 13, 2025Aug 13, 2025

    • reprozip

      Public
      ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •35•1•0•0•Updated Jul 29, 2025Jul 29, 2025

    • reproschema-server

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • reproschema2cde

      Public
      Python
      •
      MIT License
      •1•0•1•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-demo-protocol

      Public
      A demo protocol for the ReproSchema paper
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-agents

      Public
      multi-agent framework for reproschema
      MIT License
      •1•0•0•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-library

      Public
      Python
      •
      Apache License 2.0
      •12•8•5•0•Updated Jul 27, 2025Jul 27, 2025

    • babs-demo-ohbm2025

      Public
      A demo for OHBM 2025 educational course on BABS
      Python
      •
      MIT License
      •1•3•0•0•Updated Jun 23, 2025Jun 23, 2025

    • hbcd-redcap2rs

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 1, 2025Jun 1, 2025

    • OpenNeuroDerivatives-NIDM

      Public
      Dockerfile
      •0•1•5•0•Updated May 19, 2025May 19, 2025