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    • mriqc-nidm_bidsapp

      Public
      A BIDS App that runs MRIQC quality control on neuroimaging data and converts the outputs to NIDM (Neuroimaging Data Model) format for improved interoperability and integration with existing analysis provenance graphs.
      Python
      1000Updated Jan 6, 2026Jan 6, 2026
    • Containers "distribution" for reproducible neuroimaging
      Roff
      1630395Updated Jan 5, 2026Jan 5, 2026
    • HBCD LORIS format to ReproSchema format
      Python
      10023Updated Jan 5, 2026Jan 5, 2026
    • test freesurfer_bidsapp with babs
      Shell
      1010Updated Jan 4, 2026Jan 4, 2026
    • reprostim

      Public
      Automated capture of audio-visual stimuli into BIDS datasets
      Python
      46451Updated Jan 4, 2026Jan 4, 2026
    • A BIDS App for ANTs-based brain segmentation with NIDM outputs.
      Python
      1000Updated Jan 3, 2026Jan 3, 2026
    • A BIDS App implementation for FreeSurfer that provides standardized surface reconstruction and morphometric analysis with NIDM output.
      Python
      3010Updated Jan 3, 2026Jan 3, 2026
    • A standardized form generation and data collection schema to harmonize results by design across projects.
      Python
      2418168Updated Jan 1, 2026Jan 1, 2026
    • Generate custom Docker and Singularity images, and minimize existing containers
      Python
      9635379Updated Jan 1, 2026Jan 1, 2026
    • WiP for a replacement website
      HTML
      90236Updated Dec 17, 2025Dec 17, 2025
    • Python
      102154Updated Dec 8, 2025Dec 8, 2025
    • ANTS-based structural segmentation exporter to NIDM
      Python
      3000Updated Dec 2, 2025Dec 2, 2025
    • Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
      Python
      8192Updated Nov 30, 2025Nov 30, 2025
    • Repo for the process of adding "stuff" (ie the results of fmriprep, etc. processing) to the NIDM graph.
      Python
      2111Updated Nov 18, 2025Nov 18, 2025
    • A repo for developing the ReproNim inventory of training resources.
      TypeScript
      6550Updated Oct 2, 2025Oct 2, 2025
    • reproman

      Public
      ReproMan (AKA NICEMAN, AKA ReproNim TRD3)
      Python
      14241586Updated Sep 26, 2025Sep 26, 2025
    • A cookiecutter for reproschema protocols.
      Python
      1011Updated Sep 20, 2025Sep 20, 2025
    • FAIR neuroimaging with the Neuroimaging Data Model and PyNIDM
      Shell
      0000Updated Sep 3, 2025Sep 3, 2025
    • UI to render ReproSchema based protocols and assessments.
      Vue
      203463Updated Aug 25, 2025Aug 25, 2025
    • ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad
      Shell
      15323Updated Aug 14, 2025Aug 14, 2025
    • HTML
      113240Updated Aug 13, 2025Aug 13, 2025
    • reprozip

      Public
      ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
      Python
      35100Updated Jul 29, 2025Jul 29, 2025
    • Python
      1001Updated Jul 28, 2025Jul 28, 2025
    • Python
      1010Updated Jul 27, 2025Jul 27, 2025
    • A demo protocol for the ReproSchema paper
      Makefile
      0000Updated Jul 27, 2025Jul 27, 2025
    • multi-agent framework for reproschema
      1000Updated Jul 27, 2025Jul 27, 2025
    • Python
      12850Updated Jul 27, 2025Jul 27, 2025
    • A demo for OHBM 2025 educational course on BABS
      Python
      1300Updated Jun 23, 2025Jun 23, 2025
    • Python
      1000Updated Jun 1, 2025Jun 1, 2025
    • Dockerfile
      0150Updated May 19, 2025May 19, 2025