Merging Master with dev_lisa #15
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Updated skeletonize_3d call to skeletonize. Removed unnecessary imports in util.py
…ay init depending on pred/gt labels 2. Correctl pass tuples instead of generator function into vis_XX[] index 3. Iterate over labels and filter based on gt/pred to use the correct corresponding values as indexes 4. Added divison by 0 guard | For neuron: 1. ensure that gt and pred have same shape 2. only use proj_labels if we actually have a Z dimension left, to prevent weird 1 dimensional output
Get Visualization running & Added tests
Updated README.md to improve formatting and clarity.
Added a link to the official project page for dataset download.
README cleanup
… in vis nuclei and neuron (added helper to save files in png/hdf file for that). Finally, added test method for nuclei and uploaded sanity check images
… in vis nuclei and neuron (added helper to save files in png/hdf file for that). Finally, added test method for nuclei and uploaded sanity check images
Fix visualization outputs for nuclei and neurons & added test cases
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Summary:
This PR merges the work from dev_lisa into master. The branch introduces broader refactors and improvements across evaluation, visualization, tests, and project setup. The main goal is to make the repo easier accessible to others, while improving the pipeline workflow and test coverage.