Skip to content

Update cell_by_location.rq #46

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
dosumis wants to merge 1 commit into
base: master
Choose a base branch
from
Draft

Update cell_by_location.rq #46

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
13 changes: 6 additions & 7 deletions sparql/cell_by_location.rq
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,19 +1,18 @@
#+ summary: Find cells by location
#+ description: Enter an anatomical location, get back a list of cell type IRIs and labels
#+ summary: Find cells by type and location
#+ description: Input: anatomical location IRI (default added as example); optionally specify a cell type IRI. Returns a list of cell type IRIs and labels.

#+ defaults:
#+ - location: http://purl.obolibrary.org/obo/UBERON_0002113
#+ - cell: http://purl.obolibrary.org/obo/CL_0000000


PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX overlaps: <http://purl.obolibrary.org/obo/RO_0002131>
PREFIX cell: <http://purl.obolibrary.org/obo/CL_0000000>

SELECT DISTINCT ?cell_iri (STR(?qlabel) as ?cell_label)
WHERE {
?cell_iri overlaps: ?_location_iri .
?cell_iri rdfs:subClassOf cell: .
?_cell_iri overlaps: ?_location_iri .
?cell_iri rdfs:subClassOf ?_cell_iri: .
?cell_iri rdfs:label ?qlabel .
}