Production tools for SPINE

This repository contains code used to drive SPINE in a production setting. All the scripts are currently tailored for the SLURM workload manager used at S3DF and NERSC.

Installation

Nothing to install, the package relies on the usage of singularities to package the dependencies.

Clone this repository and you're good to go!

Usage

First, source the environment using the configure script in the base directory:

source configure.sh

Make sure to edit the script with the appropriate paths to lartpc_mlreco3d, OpT0Finder and the singularity container, if needed.

Most basic usage is to use the run.sh script in the base folder as follows

bash run.sh --config CONFIG_FILE --ntasks NTASKS [--flashmatch] file_list.txt

with

• CONFIG_FILE: Path to the configuration file of choice under the config fodler
• NTASKS: The number of processes to assign to the job. If not specified, only runs a single job

Only add the --flashmatch flag if you're running an analysis configuration and you want to use OpT0Finder (external package) to perform flashmatching.

The file_list.txt contains a list of paths to files to be processed. it can be produced very easily as follows:

ls -1 /path/to/dir/file*.ext > file_list.txt

One can also provide the file path directly at the end of the command line.

Repository Structure

• slurm contains all slurm scripts related to production
• config contains experiment-specific configuration files

Please consult the README of each folder respectively for more information.