Conversion from OBO to OWL Functional creates invalid IRIs

[althonos]

Hi!

When converting from OBO to OWL Functional, some prefixed identifiers are expanded without proper escaping, creating the invalid IRIs.

Example:

• Download ecocore.obo
• Run owltools ecocore.obo -o -f ofn ecocore.ofn

The resulting file will contain invalid IRIs such as:

http://www.geneontology.org/formats/oboInOwl#http://www.w3.org/2000/01/rdf-schema#seeAlso

(this is also an obvious roundtrip issue but as far as this goes I'm only concerned about the syntax right now).

Related issues:

• owlcs/owlapi#863