Added Julia Scripts

Author: ParamThakkar123

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "04a810070ef18ee41136a1d535b3d7708cc53ce9"
+project_hash = "7466aa371ae0c2e72224798b8708eaac8f0c47a6"
 
 [[deps.AliasTables]]
 deps = ["PtrArrays", "Random"]

Project.toml

@@ -2,6 +2,7 @@ name = "JuliaHealthLLM"
 authors = ["Jacob S. Zelko", "Param Thakkar"]
 
 [deps]
+Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
 DotEnv = "4dc1fcf4-5e3b-5448-94ab-0c38ec0385c1"
 Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 DrWatson = "634d3b9d-ee7a-5ddf-bec9-22491ea816e1"

data/exp_raw/General

@@ -0,0 +1,76 @@
+function restore_all_submodules()
+    try
+        # Find the git repository root
+        git_root = nothing
+        try
+            git_root = strip(read(`git rev-parse --show-toplevel`, String))
+        catch
+            error("Not inside a git repository")
+        end
+        
+        if isempty(git_root) || !isdir(git_root)
+            error("Could not determine git repository root")
+        end
+
+        # Change to git root directory for operations
+        cd(git_root) do
+            println("Working in git repository root: $git_root")
+            
+            # Get list of submodules from git config
+            println("Discovering submodules...")
+            submodules_output = read(`git submodule status --recursive`, String)
+            if isempty(strip(submodules_output))
+                println("No submodules found in this repository")
+                return
+            end
+
+            # Parse submodule paths
+            submodule_paths = String[]
+            for line in split(submodules_output, '\n')
+                if !isempty(strip(line))
+                    # Extract path (second field in submodule status output)
+                    parts = split(strip(line))
+                    if length(parts) >= 2
+                        push!(submodule_paths, parts[2])
+                    end
+                end
+            end
+
+            if isempty(submodule_paths)
+                println("No active submodules found")
+                return
+            end
+
+            # Restore each submodule
+            for path in submodule_paths
+                println("\nProcessing submodule at: $path")
+                if !isdir(path)
+                    println("Warning: Submodule directory $path not found, initializing...")
+                end
+                
+                # Initialize and update each submodule
+                run(`git submodule init $path`)
+                run(`git submodule update --recursive $path`)
+                
+                # Show status for this submodule
+                println("Current status of $path:")
+                run(`git submodule status $path`)
+            end
+            
+            println("\nAll submodules successfully restored to recorded commits!")
+        end
+        
+    catch e
+        println("Error occurred: ", e)
+        println("Failed to restore submodules. Please ensure:")
+        println("1. Git is installed and accessible")
+        println("2. You have permission to access the submodules")
+        println("3. You're inside a git repository (any subdirectory)")
+        exit(1)
+    end
+end
+
+# Execute the function if this is the main script
+if abspath(PROGRAM_FILE) == @__FILE__
+    restore_all_submodules()
+end

data/exp_raw/Julia

@@ -0,0 +1,87 @@
+using Dates
+
+function update_and_record_submodules()
+    try
+        git_root = nothing
+        try
+            git_root = strip(read(`git rev-parse --show-toplevel`, String))
+        catch
+            error("Not inside a git repository")
+        end
+        
+        if isempty(git_root) || !isdir(git_root)
+            error("Could not determine git repository root")
+        end
+
+        output_file = joinpath(git_root, "submodule_hashes.txt")
+        
+        cd(git_root) do
+            println("Working in git repository root: $git_root")
+            
+            println("Initializing submodules...")
+            run(`git submodule init`)
+            
+            println("\nUpdating submodules to latest commits...")
+            run(`git submodule update --remote --recursive`)
+            
+            println("\nRecording submodule states...")
+            submodules_output = read(`git submodule status --recursive`, String)
+            if isempty(strip(submodules_output))
+                println("No submodules found in this repository")
+                return
+            end
+
+            open(output_file, "w") do io
+                println(io, "Submodule Commit Hashes - Recorded on: ", Dates.now())
+                println(io, "=========================================")
+                
+                for line in split(submodules_output, '\n')
+                    if !isempty(strip(line))
+                        parts = split(strip(line))
+                        if length(parts) >= 2
+                            commit_hash = parts[1]
+                            commit_hash = replace(commit_hash, r"^[+-]" => "")
+                            path = parts[2]
+                            
+                            println("Recording: $path @ $commit_hash")
+                            println(io, "Path: $path")
+                            println(io, "Commit: $commit_hash")
+                            println(io, "")
+                        end
+                    end
+                end
+            end
+            
+            println("\nChecking for changes to commit...")
+            status_output = read(`git status --porcelain`, String)
+            
+            if !isempty(strip(status_output))
+                println("Committing submodule updates...")
+                run(`git add .gitmodules`)
+                run(`git add $output_file`)
+                run(`git commit -m "Updated submodules to latest commits and recorded hashes"`)
+                println("Changes committed successfully")
+            else
+                println("No changes to commit - submodules were already up to date")
+            end
+            
+            println("\nSubmodule updates completed!")
+            println("Hashes recorded in: $output_file")
+            println("Current status:")
+            run(`git submodule status --recursive`)
+        end
+        
+    catch e
+        println("Error occurred: ", e)
+        println("Failed to update submodules. Please ensure:")
+        println("1. Git is installed and accessible")
+        println("2. You have permission to access and modify the submodules")
+        println("3. You're inside a git repository")
+        println("4. You have push access to the remote repositories")
+        exit(1)
+    end
+end
+
+if abspath(PROGRAM_FILE) == @__FILE__
+    update_and_record_submodules()
+end